PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 860242
Common NameARALYDRAFT_659686
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 396aa    MW: 44969.4 Da    PI: 8.3818
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
860242genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-251160251
            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            +++++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++
  860242 11 SSSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 60
            799*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-5161IPR002100Transcription factor, MADS-box
PfamPF003195.2E-141958IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-152094IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.6012062IPR002100Transcription factor, MADS-box
CDDcd002662.06E-162586No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MTIRSLPSSS SSSSYSLAST SLSNRLETIF KKASELCTLC DIEACVIYYG PDGELKTWPK  60
EREKVRDIAL RYSQLNEALR RKKRVNLYDF LNKKKEKGLK NPNKKRKTSL KKVNELKYPI  120
SDHYSPDQIS KLIQSLELNV SKVQERLRFV ESQKQNETKP DHQGLASTSL NQQTQSLNPS  180
QFSLFIYNHG DNTLSQIPVS ASNFNQDFSA LLQESEFKNQ LVKQELCGYD QNMCMSNITN  240
NSFQHPCVSN KEHYSAVQES VNNYELNQLM QKEFYGCDQK LSNINSNKFQ HPCVSNTQHN  300
SAVQESVDNP WLNQLMQHEL YGFDQNLCSS DITNSNVPNP GLSNTVSYEL GSDFLDSCGN  360
MVAKPSEKSL KIMRNFSEQY GRRSAQGPTS VLIKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192106KKKEKGLKNPNKKRK
293105KKEKGLKNPNKKR
398106LKNPNKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap860242
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankBT0300160.0BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872955.10.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-169AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLD7MJI60.0D7MJI6_ARALL; Predicted protein
STRINGAl_scaffold_0007_37410.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-166AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]