PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

86048

Common Name

SELMODRAFT_86048

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ZF-HD

Protein Properties

Length: 94aa MW: 9615.61 Da PI: 7.3038

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
86048	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	59.6	7.1e-19	20	67	4	56
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 rY C++NhA Gg+ +DGC+Ef ++ ++ C+ACgCHR+FH + 86048 20 QRYGACKRNHALGNGGYLLDGCQEFDTD-----CETSKICSACGCHRSFHTKI 67 69*********************997.....347899*********885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-8	16	66	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.3E-15	21	66	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.424	22	67	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MASQKRAPDP IAAKASAPSQ RYGACKRNHA LGNGGYLLDG CQEFDTDCET SKICSACGCH 60 RSFHTKIGDN PGSTGAGFSE GLLDPPASPG DSR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002966706.2	9e-62	uncharacterized protein LOC9652532
TrEMBL	D8R4V0	9e-62	D8R4V0_SELML; Uncharacterized protein
STRING	EFJ32733	1e-62	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	5e-13	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	86048
Entrez Gene	9652532

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]