PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 86070
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 609aa    MW: 67379.6 Da    PI: 7.7401
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
86070genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.8e-0782103526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              lC+   r G C +Gd Ck++H+
    86070  82 LCNQLTREGKCAFGDACKYSHD 103
              8********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.25377105IPR000571Zinc finger, CCCH-type
SMARTSM003560.2678104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-581105IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-582103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-482104IPR000571Zinc finger, CCCH-type
SMARTSM0035610115140IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.362118143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.706.7E-73244485IPR013785Aldolase-type TIM barrel
CDDcd028012.79E-92248481No hitNo description
SuperFamilySSF513951.83E-62248531No hitNo description
PfamPF012072.7E-52251492IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360332350IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MSSDVGAPWT PPTSAELFAS GTVVVKREFL VEPRPPPPLD AATHADAGDA APISGGGTFG  60
AFNKRAKFAE KSRADKPRER GLCNQLTREG KCAFGDACKY SHDVDAFLKT KPPDLPGTCT  120
FVNKEGGCPY GVRCRYYGTH ATGEGRDGAT VAESTTTLEP PKTVEKEMNF VDKDVMVRLR  180
KKKYDFSRAD TIVKEVLRAM ETKKDEQTKA GEESAAKRAK VDEENRTDTG AFTKARVEEK  240
RTIDFKDKLY LAPLTTVGNL PFRRVCKTLG ADITCGEMAL CTSLLQGLPS EWALLRRHKS  300
EDIFGVQICG GYPDSVTRCC QLLEDTIDVD FIDINMGCPI DSVCQKGYGS MMLEKPKKME  360
TVIRAASAAL GKCSLTFKTR MAYTDKSRVA HTFAPKVAEW GAAAMTLHGR TRAQRYRSVA  420
DWEYTKLTKE SSSVPLIGNG DVYMQKDYYT HLEEHSVDTC MLARGALIKP WLFTEIKERR  480
DWDISSRERF DILKSFASFG LEHWGSDTRG VESTRKYLLE WMSFTYRYTP IGLLDHSYGA  540
AAMTQRPPAF VGRDDLETLM ASEASSDWVK ISTMLLGPPP EGFAFQPKHK SNAYASESGA  600
ALGDMDQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A3e-2624548127261tRNA-dihydrouridine synthase B
6ei9_B3e-2624548127261tRNA-dihydrouridine synthase B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005810.0CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415794.10.0predicted protein
SwissprotQ7ZWS11e-179DUS3L_XENLA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA4RQU50.0A4RQU5_OSTLU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGABO940860.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP58777