PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 860781
Common NameARALYDRAFT_660225
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24916.1 Da    PI: 8.4018
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
860781genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-1980132456
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++t+eql  Le  F+++ +++ e++ +LAk+lgL+ rqV vWFqNrRa++k
    860781  80 NKRLTSEQLASLELRFQEDFKLDSERKLKLAKELGLEPRQVAVWFQNRRARWK 132
               5679************************************************9 PP
2HD-ZIP_I/II1123.9e-3678166189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +k +rl++eq+++LE  F+e+ kL++erK +la+eLgl+prqvavWFqnrRAR+k k+lE+ y++L+++yda+ +e+++L++ev++Lr+
       860781  78 KKNKRLTSEQLASLELRFQEDFKLDSERKLKLAKELGLEPRQVAVWFQNRRARWKVKHLEESYDSLRQEYDAIWREKQMLHDEVKKLRA 166
                  589************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1966133IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-2072139IPR009057Homeodomain-like
PROSITE profilePS5007117.16774134IPR001356Homeobox domain
SMARTSM003891.4E-1777138IPR001356Homeobox domain
CDDcd000861.39E-1578135No hitNo description
PfamPF000461.2E-1679132IPR001356Homeobox domain
PRINTSPR000317.6E-6105114IPR000047Helix-turn-helix motif
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PRINTSPR000317.6E-6114130IPR000047Helix-turn-helix motif
PfamPF021831.1E-6136166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEWSTTSNVQ NERVAFMPPP WLESNSFNSL RSFNYDSYTA GNSYKSANTQ TGPVIPVPES  60
EKIINAYQCP SNNNEMIKKN KRLTSEQLAS LELRFQEDFK LDSERKLKLA KELGLEPRQV  120
AVWFQNRRAR WKVKHLEESY DSLRQEYDAI WREKQMLHDE VKKLRAIILR DQGLMMNINQ  180
TAGGDQTIGL GDQYNSLMMV ASSGWPPISQ PPNPW*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap860781
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878992.11e-137putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-100ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLD7LWT81e-159D7LWT8_ARALL; Predicted protein
STRINGAl_scaffold_0006_2901e-159(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-102homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]