PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 862319
Common NameARALYDRAFT_661763
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 95aa    MW: 10926.7 Da    PI: 10.7413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
862319genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-141767155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            + y+GVr ++ +g+Wv+eIr+p++   + r+++g+  t e+A + ++ a+ +++g
  862319 17 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWIGNLPTVEMAMRSHDVAAMSIKG 67
            68*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-91767IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-141871IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-221872IPR001471AP2/ERF domain
SMARTSM003801.5E-181877IPR001471AP2/ERF domain
PROSITE profilePS5103218.7161876IPR001471AP2/ERF domain
PRINTSPR003672.5E-71930IPR001471AP2/ERF domain
CDDcd000188.13E-211972No hitNo description
PRINTSPR003672.5E-74157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MADSSSDKEK KENSKQPVYR GVRMRSWGKW VSEIREPRKK SRIWIGNLPT VEMAMRSHDV  60
AAMSIKGTSA ILISYGVMER WREEGERLRK CVNV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap862319
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615821e-91AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78.
GenBankAY0889181e-91AY088918.1 Arabidopsis thaliana clone 99612 mRNA, complete sequence.
GenBankBT0029241e-91BT002924.1 Arabidopsis thaliana clone RAFL14-88-G18 (R20108) putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankBT0043431e-91BT004343.1 Arabidopsis thaliana clone U20108 putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankCP0026871e-91CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195006.11e-41Integrase-type DNA-binding superfamily protein
SwissprotQ9M0801e-42ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLD7LYK94e-61D7LYK9_ARALL; Predicted protein
STRINGAl_scaffold_0006_18287e-62(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]