PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 862948
Common NameARALYDRAFT_662392
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 281aa    MW: 32108.5 Da    PI: 6.6021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
862948genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.7e-12311121298
             HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             ++++ ++p +f+ ++ g+   +  +++  ++g+sW++ l  ++ ++  +++++ W eFv++n+L  +D + Fk+d+++   l v++f+
  862948  31 SKSMRSFPAEFVISMPGS--LEHRVVFSVRWGNSWQLWL--EREKEDlFMIEEDWDEFVNDNHLGPNDNLFFKHDSTMF--LEVQIFK 112
             3355699*****999666..4447***************..8888888*************************876444..5888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-1614114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-1515115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-1317112No hitNo description
SMARTSM010198.5E-1619114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.70120114IPR003340B3 DNA binding domain
PfamPF023622.9E-1031113IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-12175267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-8176269IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-9182278IPR003340B3 DNA binding domain
PROSITE profilePS508636.372240274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLPKSVTDKI QENVSKPCFW KSLSPGQNWK SKSMRSFPAE FVISMPGSLE HRVVFSVRWG  60
NSWQLWLERE KEDLFMIEED WDEFVNDNHL GPNDNLFFKH DSTMFLEVQI FKNDGKEIID  120
APLEVEPETE QLHPTTPKNF HKETTHASAS ASEFSENGPE RQGCVDVKNP ELYLLNPKNP  180
YFVKTLSKRN DVLYVPKPVI KKYGLKFGPT HSPMHYLLPG DKINGLTKLY GGGDAPCFNG  240
WVGLCRKYNL KTGDSVVCEL ERSGDLVTAV RVHFINENMR *
Cis-element ? help Back to Top
SourceLink
PlantRegMap862948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4469820.0DQ446982.1 Arabidopsis thaliana clone pENTR221-At5g25470 unknown (At5g25470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874263.10.0B3 domain-containing protein At5g25470
RefseqXP_020876200.10.0B3 domain-containing protein At5g25470
RefseqXP_020876201.10.0B3 domain-containing protein At5g25470
SwissprotQ1PDT61e-162Y5547_ARATH; B3 domain-containing protein At5g25470
TrEMBLD7M3Z50.0D7M3Z5_ARALL; Predicted protein
STRINGAl_scaffold_0006_24570.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.21e-164B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]