PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

865302

Common Name

ARALYDRAFT_664746

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 100aa MW: 11263.9 Da PI: 4.7126

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
865302	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	29.4	2.2e-09	6	69	35	97
DUF260 35 klFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + FG+ nv+++l++l ++e++e+ +++l y A+ rd ++G+ ++il++++ l++ ++ ++++ 865302 6 QDFGVVNVCNILDNLeSPEQHEIFANCLRYAAKSSRRDSISGCPAMILHYKSILNSIEQGIKSA 69 56***********6677799999*************************999988877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.958	1	73	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-8	2	68	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
FEDIYQDFGV VNVCNILDNL ESPEQHEIFA NCLRYAAKSS RRDSISGCPA MILHYKSILN 60 SIEQGIKSAM NEFGTYVGPD QVLKFYDFPM PAVFLLHQL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	865302

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869811.1	1e-42	LOB domain-containing protein 32
Swissprot	O49651	3e-40	LBD32_ARATH; LOB domain-containing protein 32
TrEMBL	D7LM44	3e-68	D7LM44_ARALL; Predicted protein (Fragment)
STRING	Al_scaffold_0005_781	5e-69	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22700.1	1e-42	LOB domain-containing protein 32

Link Out ? help Back to Top
Phytozome	865302
Entrez Gene	9313202