PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

865377

Common Name

ARALYDRAFT_664821

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 266aa MW: 30362.5 Da PI: 7.5739

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
865377	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	94.4	1.2e-29	80	171	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +fqr wseeD+i+lL G+idf +tg+s++dd+++f e+ k+sisf+v++ +q+v+Ki +LK+K+ k++ + ++ hd++++el+kkiWgs 865377 80 MFQRSWSEEDQIMLLEGMIDFSRDTGTSVYDDMNGFSEKHKDSISFDVKNvNQFVKKIWSLKNKYFLKRRS------RVSTNVHDKNCLELAKKIWGS 171 79********************************************7549**********99998......8999*************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.6E-23	81	170	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MTKKQSQPSK REIEEDPSTE VEVKRAKMEN GPETENKPIF QRIKKDLVSE SETHSSESDS 60 ETEPAATKTT PPAAMAKNPM FQRSWSEEDQ IMLLEGMIDF SRDTGTSVYD DMNGFSEKHK 120 DSISFDVKNV NQFVKKIWSL KNKYFLKRRS RVSTNVHDKN CLELAKKIWG SDVDATLKVD 180 DSFKVDGVKV ECDWFERSFL VGALKNLGAG IDEETLKEKW SLAPLKTRKR IEEKMKSVQA 240 NELKLVLRKL DVLHEMTTFV TSKSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	865377

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020880771.1	1e-169	probable transcription factor At4g00610
Swissprot	O65270	3e-61	STKLQ_ARATH; Probable transcription factor At4g00610
TrEMBL	D7LNW7	0.0	D7LNW7_ARALL; Predicted protein
STRING	Al_scaffold_0005_856	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00610.1	4e-61	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	865377
Entrez Gene	9313237