PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 865684
Common NameARALYDRAFT_665128
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 233aa    MW: 25744.8 Da    PI: 6.2878
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
865684genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.91.9e-4051361128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
             lp+GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+    +++++ ++w fF++r++++a+g r++r+t sgyWkatg+  +v+s ++++
  865684   5 LPVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPDNRV 107
             79****************************999**************9656766667888******************************************* PP

     NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
             +g+kkt+vfy+g+ap+g+kt+W m+ey++
  865684 108 IGVKKTMVFYTGKAPTGRKTQWKMNEYKA 136
             ***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-423141IPR003441NAC domain
PROSITE profilePS5100542.7145160IPR003441NAC domain
PfamPF023654.6E-206135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEEELPVGFR FYPTEVELLT YYLRIQLGGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR  60
GDAEQWLFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSPDNRVIGV KKTMVFYTGK  120
APTGRKTQWK MNEYKAVETA SVSTTATTIP KSGSSRAFDR RPTEAYAIER TLPSHGVETS  180
SRSTLSTSPE TSHSGGNQVD LPENATTITQ SISDMVDGLS QPFWEWEQMN WS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-32513817144NO APICAL MERISTEM PROTEIN
1ut4_B4e-32513817144NO APICAL MERISTEM PROTEIN
1ut7_A4e-32513817144NO APICAL MERISTEM PROTEIN
1ut7_B4e-32513817144NO APICAL MERISTEM PROTEIN
3swm_A4e-32513820147NAC domain-containing protein 19
3swm_B4e-32513820147NAC domain-containing protein 19
3swm_C4e-32513820147NAC domain-containing protein 19
3swm_D4e-32513820147NAC domain-containing protein 19
3swp_A4e-32513820147NAC domain-containing protein 19
3swp_B4e-32513820147NAC domain-containing protein 19
3swp_C4e-32513820147NAC domain-containing protein 19
3swp_D4e-32513820147NAC domain-containing protein 19
4dul_A4e-32513817144NAC domain-containing protein 19
4dul_B4e-32513817144NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap865684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386411e-125AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBankCP0026861e-125CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001118771.11e-156NAC domain containing protein 61
SwissprotQ9M2901e-160NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLD7LNR21e-170D7LNR2_ARALL; Predicted protein
STRINGAl_scaffold_0005_11631e-171(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.11e-144NAC domain containing protein 61