PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

866082

Common Name

ARALYDRAFT_665526

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 450aa MW: 49664.2 Da PI: 7.2699

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
866082	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	109	169	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss 866082 109 PTKILPCPRCKSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 169 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	106	166	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-32	111	167	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	113	167	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	115	151	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MMMESRDPAI KLFGMKIPLT AVFESSVTVE DEEEDDWSGG DDKSPDKVAL EISDKNNKNC 60 NNNSFNNSND SKPETVDKEE ATSADQIESS ESPEDNQQTT ADGKTLKKPT KILPCPRCKS 120 MDTKFCYYNN YNINQPRHFC KACQRYWTAG GTMRNVPVGA GRRKNKSSSS HYRHITISEA 180 LEAARLDPGL QANTRVLSFG LEAHQQHAAP MTPVMKLQGD QKVSTGARNG FHGLADQRLV 240 ARVENGDDCS SGSSVTTSNN HSVDESRAQN GRVVDPQMNN NNNNMNGYAC IPGVPWPYTW 300 NPAMPPPGFY PPPGYPMPFY PYWTIPMLSP HQSSSSMSQK GPNPNPPTLG KHSRDEESAK 360 KDNETERKQR NGCVLVPKTL RIDDPNEAAK SSIWTTLGIK NEAMCKAGGM FKGFDQKTKM 420 NNNDKAENSP VLSANPAALS RSHNFHEQI*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MMMESRDPAI KLFGMKIPLT AVFESSVTVE DEEEDDWSGG DDKSPDKVAL EISDKNNKNC  60
NNNSFNNSND SKPETVDKEE ATSADQIESS ESPEDNQQTT ADGKTLKKPT KILPCPRCKS  120
MDTKFCYYNN YNINQPRHFC KACQRYWTAG GTMRNVPVGA GRRKNKSSSS HYRHITISEA  180
LEAARLDPGL QANTRVLSFG LEAHQQHAAP MTPVMKLQGD QKVSTGARNG FHGLADQRLV  240
ARVENGDDCS SGSSVTTSNN HSVDESRAQN GRVVDPQMNN NNNNMNGYAC IPGVPWPYTW  300
NPAMPPPGFY PPPGYPMPFY PYWTIPMLSP HQSSSSMSQK GPNPNPPTLG KHSRDEESAK  360
KDNETERKQR NGCVLVPKTL RIDDPNEAAK SSIWTTLGIK NEAMCKAGGM FKGFDQKTKM  420
NNNDKAENSP VLSANPAALS RSHNFHEQI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	866082

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065152	0.0	AY065152.1 Arabidopsis thaliana H-protein promoter binding factor-2a (At3g47500; F1P2.50) mRNA, complete cds.
GenBank	AY128757	0.0	AY128757.1 Arabidopsis thaliana H-protein promoter binding factor-2a (At3g47500) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002877565.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	0.0	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	D7LNE3	0.0	D7LNE3_ARALL; Predicted protein
STRING	Al_scaffold_0005_1561	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	0.0	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	866082
Entrez Gene	9311911

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]