PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

866425

Common Name

ARALYDRAFT_665869

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 187aa MW: 21296.2 Da PI: 6.8604

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
866425	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.1	1.4e-38	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk lrrkC+kdCv+apyfp ++++++++vhk+FGas+v l+++l++ +re am+sl++eA++r++dPvyG++++i +l++ql+ ++++la++k+e 866425 12 PCAACKQLRRKCTKDCVFAPYFPTTKQENYEAVHKVFGASHVATLINDLHPLKREFAMNSLAWEARVRVKDPVYGCTAIIDRLESQLKDSEEQLAMVKNE 111 7***********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.058	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-37	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MLFHQMDKIS TPCAACKQLR RKCTKDCVFA PYFPTTKQEN YEAVHKVFGA SHVATLINDL 60 HPLKREFAMN SLAWEARVRV KDPVYGCTAI IDRLESQLKD SEEQLAMVKN ELASYGIVPT 120 CVPSPPMMYQ QMHNNPMTIS EYTPNNGGFL TGQQLHDEAQ RFVSTQRAQM QQTQETQTQH 180 NEIDRD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	10	123	9	127	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	10	123	9	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	866425

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882469.1	1e-141	LOB domain-containing protein 28 isoform X1
Swissprot	Q9SCS4	3e-97	LBD28_ARATH; LOB domain-containing protein 28
TrEMBL	D7LTF6	1e-140	D7LTF6_ARALL; Predicted protein
STRING	Al_scaffold_0005_1904	1e-140	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50510.1	3e-92	LOB domain-containing protein 28

Link Out ? help Back to Top
Phytozome	866425
Entrez Gene	9313817