PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

868378

Common Name

ARALYDRAFT_667822

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 224aa MW: 25591.7 Da PI: 10.1077

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
868378	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.8	1.1e-21	32	74	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i+fs+ k 868378 32 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKK 74 8999***********************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.591	22	82	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-30	22	81	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.99E-34	23	98	No hit	No description
SuperFamily	SSF55455	2.09E-28	23	102	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-17	24	44	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-25	31	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-17	44	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-17	59	80	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009559	Biological Process	embryo sac central cell differentiation
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MYKKQLRTRH NKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC 60 GAEIGIIVFS PAKKPFSFGH PSVESVLDRY MSRNNMSLVQ TQQPQGSPAA SCELNMQLTH 120 ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNL VQLQEMKYAL EELRKTVVTN 180 MASFNEAKDD VFGFLDNKVT APPYMNMSSG LSSIYYANGN GCF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-15	22	101	1	87	MEF2 CHIMERA
6byy_B	2e-15	22	101	1	87	MEF2 CHIMERA
6byy_C	2e-15	22	101	1	87	MEF2 CHIMERA
6byy_D	2e-15	22	101	1	87	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	868378

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006585	0.0	AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	DQ056542	0.0	DQ056542.1 Arabidopsis thaliana MADS-box family protein (At2g24840) mRNA, complete cds.
GenBank	EU836691	0.0	EU836691.1 Arabidopsis thaliana MADS box protein AGL61 (AGL61) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020883034.1	1e-157	agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	1e-143	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	D7LJG1	1e-166	D7LJG1_ARALL; Predicted protein
STRING	Al_scaffold_0004_541	1e-167	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-145	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	868378
Entrez Gene	9314872

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]