PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

868498

Common Name

ARALYDRAFT_667942

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 296aa MW: 33187.6 Da PI: 5.1073

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
868498	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	79.8	4.3e-25	35	113	20	98
DUF573 20 idfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +d++aktg +++ d+dafy+f+ +si +k+sk+q+++Kir+LK++f +++k+++g++p+f++++d+++f++s++iWg+ 868498 35 LDYRAKTGFQSKIDWDAFYHFLGSSIVAKFSKEQVLSKIRKLKRRFLVHWEKINEGNDPKFTRSSDSEAFGFSSMIWGQ 113 79***************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.6E-17	35	112	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MVSPKQLDFS SSGGAGDSDD TLSRRKSPRN PPSKLDYRAK TGFQSKIDWD AFYHFLGSSI 60 VAKFSKEQVL SKIRKLKRRF LVHWEKINEG NDPKFTRSSD SEAFGFSSMI WGQNEAEFGN 120 HDGMDKEHEE PENGAAENGT AQNESGEEML KEHEETLNEN GAAKITDNNG TSQIAPQSKS 180 EEEMLKEHEE VVANTEPLYE NGRAKTKKNG TTAGKESHDD DDELLAVQDA FEAVMSQGLS 240 DYQKKLQLEK LMNLGTGKRR ELSDEWKALC VEERKLNIKK LRFSAKLAEA ANYNQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	868498

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006053	1e-138	AC006053.3 Arabidopsis thaliana chromosome 2 clone F3N11 map B68, complete sequence.
GenBank	AY072164	1e-138	AY072164.1 Arabidopsis thaliana unknown protein (At2g25650) mRNA, complete cds.
GenBank	AY084223	1e-138	AY084223.1 Arabidopsis thaliana clone 100283 mRNA, complete sequence.
GenBank	AY096417	1e-138	AY096417.1 Arabidopsis thaliana unknown protein (At2g25650) mRNA, complete cds.
GenBank	CP002685	1e-138	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884342.1	0.0	GLABROUS1 enhancer-binding protein-like 1
Swissprot	Q8VYD2	1e-149	STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBL	D7LL73	0.0	D7LL73_ARALL; Predicted protein
STRING	Al_scaffold_0004_661	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	1e-126	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	868498
Entrez Gene	9314938

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]