PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 868812
Common NameARALYDRAFT_668256
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 388aa    MW: 43535.2 Da    PI: 4.9043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
868812genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-182269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
           868812 22 KGPWTQAEDNLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                     79*******************************************996 PP
2Myb_DNA-binding47.73.4e-1575118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+ E+++ ++++++lG++ W++ a++++ gRt++++k++w++
           868812  75 KGAFTEKEEKRVIELHALLGNK-WARMAAELP-GRTDNEIKNFWNT 118
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.481769IPR017930Myb domain
SuperFamilySSF466891.35E-2820116IPR009057Homeodomain-like
SMARTSM007173.3E-152171IPR001005SANT/Myb domain
PfamPF002492.5E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-242376IPR009057Homeodomain-like
CDDcd001672.62E-122469No hitNo description
PROSITE profilePS5129424.28670124IPR017930Myb domain
SMARTSM007171.8E-1474122IPR001005SANT/Myb domain
PfamPF002492.5E-1475118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2477122IPR009057Homeodomain-like
CDDcd001671.59E-1077120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGKVRHDSGS DDETSIDKSF TKGPWTQAED NLLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGAFTE KEEKRVIELH ALLGNKWARM AAELPGRTDN EIKNFWNTRL  120
KRLQRLGLPV YPDEVREQAM NAATQSGLNT DSLDGHHSQD SLEADCVEIP ELDFQHLPLN  180
QCSSYYQSML RNVPPTGVFV RQRPYFFQPN MYNLITTPPY MSTGKRSREP ETAFPGGYGM  240
NEQSPPLWNY PFVENISEQL PDSHLFGNAT YSSSPEPLIQ GVEKLELPSF QYLEEPGGWG  300
AEQSDQMPEH HESDNTLVQS PLTDHTPSDC PSSLYDGLLE SVVYGSSGEK PATDTDSESS  360
LFQSSLLGHT EFTPANENRT GKLFCYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30201225106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap868812
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465710.0DQ446571.1 Arabidopsis thaliana clone pENTR221-At2g26960 myb family transcription factor (At2g26960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880852.20.0transcription factor MYB104
SwissprotQ9SM271e-125MY104_ARATH; Transcription factor MYB104
TrEMBLD7LFF10.0D7LFF1_ARALL; Predicted protein
STRINGAl_scaffold_0004_9750.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.10.0myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]