PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

869370

Common Name

ARALYDRAFT_668814

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 123aa MW: 13904.9 Da PI: 9.9459

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
869370	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.8e-12	22	68	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + +++K +K++i A++ +++ 869370 22 SKACREKQRRDRLNDKFTELSSILEPG---RAPKTDKVAIISDAIRMVNQ 68 5778********************9...9************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.798	18	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.11E-5	21	74	No hit	No description
SuperFamily	SSF47459	2.88E-13	21	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-13	22	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-10	22	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-8	24	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
IDQLDGSASV RIKSESCAGS SSKACREKQR RDRLNDKFTE LSSILEPGRA PKTDKVAIIS 60 DAIRMVNQVR DEAQKLKDLN SSLQEKIKEL KDEKQKLKVE KERIEQQLKA IKTSFDSMAQ 120 LVS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	869370

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488632	1e-92	AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY085619	1e-92	AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBank	BT002433	1e-92	BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBank	BT006273	1e-92	BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002881143.2	2e-80	transcription factor bHLH34
Refseq	XP_020871298.1	8e-81	transcription factor bHLH115, partial
Swissprot	Q9C682	4e-60	BH115_ARATH; Transcription factor bHLH115
TrEMBL	D7LCW5	4e-80	D7LCW5_ARALL; Predicted protein (Fragment)
STRING	Al_scaffold_0004_1533	6e-81	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	2e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	869370
Entrez Gene	9317210

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]