PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 870000
Common NameARALYDRAFT_669444
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 180aa    MW: 21043.7 Da    PI: 9.0676
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
870000genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.3e-1872127257
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
               +++ ++t+eql+ Le+ F+++ +++ +++ +L+k++gL+ rq+ vWFqNr+a++k+
    870000  72 KRKKKMTSEQLKFLETSFQEEIKLNPDRKMKLSKEIGLQPRQIAVWFQNRKARWKN 127
               67889*************************************************95 PP
2HD-ZIP_I/II110.51.1e-3572163192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ++k+++++eq+k+LE+sF+ee kL+p+rK++l++e+glqprq+avWFqnr+AR+k+kqlE+ ye+L++++d +++e+e L++e ++L++ ++
       870000  72 KRKKKMTSEQLKFLETSFQEEIKLNPDRKMKLSKEIGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDVVSREKELLQEELTQLKSMIR 163
                  58**************************************************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1957130IPR009057Homeodomain-like
PROSITE profilePS5007116.84468128IPR001356Homeobox domain
SMARTSM003892.5E-1670132IPR001356Homeobox domain
CDDcd000861.67E-1372129No hitNo description
PfamPF000463.2E-1572127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-2074135IPR009057Homeodomain-like
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEYWSSSFID GASSSNFISP FYNFDHFSGN QDNRCLSSGT MVSAQQDMLH FPLAMVESGY  60
GEESNSFNGK EKRKKKMTSE QLKFLETSFQ EEIKLNPDRK MKLSKEIGLQ PRQIAVWFQN  120
RKARWKNKQL EHLYESLRQE FDVVSREKEL LQEELTQLKS MIRENGSSKK KQTWEKTCS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap870000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565691e-120DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879619.11e-130homeobox-leucine zipper protein ATHB-22
SwissprotQ4PSR71e-115ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLD7LJ551e-129D7LJ55_ARALL; Predicted protein
STRINGAl_scaffold_0004_21631e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.11e-107homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]