PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

870655

Common Name

ARALYDRAFT_670099

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ERF

Protein Properties

Length: 115aa MW: 12971.1 Da PI: 10.5638

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
870655	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.3	2.2e-14	17	67	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r+++g+ t e+A + ++ a+ +++g 870655 17 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWIGNLPTVEMAMRSHDVAAMSIKG 67 68***998.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.8E-9	17	67	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.42E-14	18	71	IPR016177	DNA-binding domain
SMART	SM00380	1.5E-18	18	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.716	18	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-22	18	72	IPR001471	AP2/ERF domain
CDD	cd00018	2.33E-21	19	72	No hit	No description
PRINTS	PR00367	3.1E-7	19	30	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-7	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MADSSSDKEK KENSKQPVYR GVRMRSWGKW VSEIREPRKK SRIWIGNLPT VEMAMRSHDV 60 AAMSIKGTSA ILISYGVMER WREEGAKLEE KEREMKKSAG GLMQLGLLPH GPVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	870655

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161582	2e-91	AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78.
GenBank	AY088918	2e-91	AY088918.1 Arabidopsis thaliana clone 99612 mRNA, complete sequence.
GenBank	BT002924	2e-91	BT002924.1 Arabidopsis thaliana clone RAFL14-88-G18 (R20108) putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBank	BT004343	2e-91	BT004343.1 Arabidopsis thaliana clone U20108 putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBank	CP002687	2e-91	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869242.1	2e-41	ethylene-responsive transcription factor ERF043
Swissprot	Q9M080	3e-42	ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBL	D7LHZ4	1e-75	D7LHZ4_ARALL; Predicted protein
STRING	Al_scaffold_0004_2818	2e-76	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32800.1	2e-34	ERF family protein

Link Out ? help Back to Top
Phytozome	870655
Entrez Gene	9317874

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]