PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 871063
Common NameARALYDRAFT_670507
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 193aa    MW: 21172.2 Da    PI: 6.9321
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
871063genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.96.9e-3817116199
  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
             +C aCk+lrrkC+k+Cv+apyf a+q +++fa+vhk+FGasn +k+l +lp ++r da+ +l+ eA ar+rdPvyG+vg++++lq+q+++l+aela++++
  871063  17 PCGACKFLRRKCVKGCVFAPYFDADQgTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLCHEAMARLRDPVYGSVGHLFSLQHQVMNLQAELAHVQA 116
             7*************************89********************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.58316118IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3717115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MMTANLNGGG RGGGEGPCGA CKFLRRKCVK GCVFAPYFDA DQGTARFAAV HKVFGASNAS  60
KMLLRLPLHK RLDAVVTLCH EAMARLRDPV YGSVGHLFSL QHQVMNLQAE LAHVQALLST  120
FQRFPLQSPQ QMQPPPFDLA HNNEYTMEPS NLDGVWEEEH LLQDGTEDGD FQELASQFVS  180
RYLPAVKLPA CT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-35131177112LOB family transfactor Ramosa2.1
5ly0_B4e-35131177112LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap871063
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738560.0AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882012.21e-143LOB domain-containing protein 19
SwissprotO221321e-118LBD19_ARATH; LOB domain-containing protein 19
TrEMBLD7LCJ01e-141D7LCJ0_ARALL; Predicted protein
STRINGAl_scaffold_0004_32261e-142(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.11e-111LOB domain-containing protein 19