PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 871418
Common NameARALYDRAFT_670862
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 203aa    MW: 23116.3 Da    PI: 10.0596
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
871418genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-162774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l +++  +G g W+++a+  g++Rt+k+c++rw++yl
           871418 27 KGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 74
                     79********************************************97 PP
2Myb_DNA-binding56.56.2e-1880123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++++lG++ W++Ia++++ gRt++++k++w++
           871418  80 RGNITAEEQLLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 123
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8642274IPR017930Myb domain
SuperFamilySSF466892.25E-2925121IPR009057Homeodomain-like
SMARTSM007179.4E-122676IPR001005SANT/Myb domain
PfamPF002491.9E-142774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-212881IPR009057Homeodomain-like
CDDcd001672.34E-82974No hitNo description
PROSITE profilePS5129424.74975129IPR017930Myb domain
SMARTSM007172.1E-1679127IPR001005SANT/Myb domain
PfamPF002492.1E-1680123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2582129IPR009057Homeodomain-like
CDDcd001671.69E-1284123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
METTMKKKGR GKATITSQKE EEGTVRKGPW TMEEDFILFN YILNHGEGLW NSVAKASGLK  60
RTGKSCRLRW LNYLRPDVRR GNITAEEQLL IIQLHAKLGN RWSKIAKHLP GRTDNEIKNF  120
WRTKIQRHMK VMSSEHMICS GNSQSSGMTT TDQGSSGKAI DMAESFSQAK TTFNVVEQSN  180
ENYWNVEDLW PVHLLNGDHH VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2711271126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00324DAPTransfer from AT3G01530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap871418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195820.0AY519582.1 Arabidopsis thaliana MYB transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882176.11e-151transcription factor MYB57
SwissprotQ9SSA11e-135MYB57_ARATH; Transcription factor MYB57
TrEMBLD7L9N91e-149D7L9N9_ARALL; Predicted protein
STRINGAl_scaffold_0003_591e-150(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-137myb domain protein 57