PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 871928
Common NameARALYDRAFT_671372
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26131.9 Da    PI: 9.0836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
871928genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.25.6e-151146340
            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
            i+n+s r+ tf kR++g++KK +ELS+LC++++  ii+
  871928 11 ISNDSSRKATFKKRKKGLMKKVNELSTLCGINA--IIY 46
            9*****************************997..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.12E-17161IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-19158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.105145IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-151148IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTRKKVKVAY ISNDSSRKAT FKKRKKGLMK KVNELSTLCG INAIIYSPYD SNPGVWPSNS  60
GVQRFEILQN SGIEIGESSN NVGAFSGTSE RFGSMAVVAS TTAPTHTTIE AGSSSSFPAF  120
LNPIQQQHPQ FRHPSSPQVG FYEKSRSLNL NLNDNHNQNQ QKWFMEMMNH PDQLNYAAEQ  180
KGFPFMDDNH HNNNHHDPHQ QQQIPGDSST VSAAVSSSST ISLTNPNLTN NIWFC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKVAYISNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap871928
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8306968e-37AB830696.1 Turritis glabra AGL80 gene for agamous-like MADS-box protein AGL80, partial cds, isolate: e064.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466902.11e-47PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-26AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLD7L4P11e-175D7L4P1_ARALL; Predicted protein
STRINGAl_scaffold_0003_5691e-176(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.26e-26M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]