PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 873583
Common NameARALYDRAFT_673027
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 214aa    MW: 23511.4 Da    PI: 8.3645
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
873583genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.58.8e-19164200135
    GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C+  nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++
  873583 164 CTnmNCNALNTPMWRRGPLGPKSLCNACGIKFRKEEE 200
             55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-10160209IPR000679Zinc finger, GATA-type
PfamPF003202.0E-16164200IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-10167200No hitNo description
Gene3DG3DSA:3.30.50.101.7E-12167200IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.358168196IPR000679Zinc finger, GATA-type
CDDcd002024.03E-10168197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEQELDLTLK LGLPNSTVDT HLSLNLSTTT TNQGDNNNDG GEVLNYRRAL WGNDEVIHNE  60
AARNNVEFNI RIYNYVFQQL AGAPNTLNFA PYPMPSPAPA PAPAPAPETP PASDEYVLID  120
VPARRVRRNN SQTMANTWNE NATAKRLRGC GGSCGGRIEG MKKCTNMNCN ALNTPMWRRG  180
PLGPKSLCNA CGIKFRKEEE RKAKRNGVIE LDN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap873583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936250.0AB493625.1 Arabidopsis thaliana At3g20750 mRNA for hypothetical protein, partial cds, clone: RAAt3g20750.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886305.11e-122GATA transcription factor 29
SwissprotQ9LT453e-94GAT29_ARATH; GATA transcription factor 29
TrEMBLD7KZW11e-156D7KZW1_ARALL; Predicted protein
STRINGAl_scaffold_0003_22241e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.18e-82GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]