PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 873692
Common NameARALYDRAFT_673136
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 125aa    MW: 14291.8 Da    PI: 9.8048
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
873692genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.16.6e-34121121100
  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
             +Ca C +++++C+k+C +apyfpae+  +f+ +hklFG+ n++k+++ ++e+e + +++ss+++e++a+ +dPv+G +g+i+kl++q+e  k  l++lke+
  873692  12 PCALCTTKNKRCPKNCEFAPYFPAEKLGEFESAHKLFGTPNIMKMMRLVSEDEnKGMLASSILMEGDAWKKDPVRGGFGIIQKLKWQIELRKLYLNELKEK 112
             7************************************************7766599*************************************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.60211113IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-2912109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDASRVNVNR APCALCTTKN KRCPKNCEFA PYFPAEKLGE FESAHKLFGT PNIMKMMRLV  60
SEDENKGMLA SSILMEGDAW KKDPVRGGFG IIQKLKWQIE LRKLYLNELK EKIKVEKEKT  120
ELRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-15111001098LOB family transfactor Ramosa2.1
5ly0_B1e-15111001098LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap873692
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738681e-121AB473868.1 Arabidopsis thaliana ASL35 mRNA for ASYMMETRIC LEAVES2-like 35 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888773.11e-70LOB domain-containing protein 9
SwissprotO821982e-64LBD9_ARATH; LOB domain-containing protein 9
TrEMBLD7L0W53e-86D7L0W5_ARALL; Predicted protein
STRINGAl_scaffold_0003_23334e-87(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.16e-66LOB domain-containing protein 9