PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 874794
Common NameARALYDRAFT_674238
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 240aa    MW: 27102.9 Da    PI: 9.5331
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
874794genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.7e-1431893697
            EEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3 36 ltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
             +++ ++g sWev +  +k+++ y+l+ +GW +Fv++n L  ++f++F+++g+++f  ++ +f
  874794 31 NKIRAQWGSSWEVAI--SKNPRFYYLEkSGWGKFVRDNALGNNEFITFTHKGKMRF--TLNIF 89
            567899*********..******777759*********************999999..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.307192IPR003340B3 DNA binding domain
SMARTSM010198.1E-8792IPR003340B3 DNA binding domain
CDDcd100171.04E-91790No hitNo description
SuperFamilySSF1019361.37E-123298IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-123289IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-133393IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0026144235IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-7162234IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-5162235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.626184235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAINPDYLRC KEERNNESFF KEKIDIVSIL NKIRAQWGSS WEVAISKNPR FYYLEKSGWG  60
KFVRDNALGN NEFITFTHKG KMRFTLNIFK QDGKEMMQPP QSSSFLASSS RGIKTEQRED  120
DKKEEVVVSS ELSPTTAAES NGGTSKRNLN LGKKKARGDS AAFDKAHMPK ENAMFKIHHP  180
DGKRSWNVTY LASTTVAFSA GWICLIKEYP IVAGVTCKLT LIKPDELLLV VLRPEEETE*
Cis-element ? help Back to Top
SourceLink
PlantRegMap874794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887801.11e-156B3 domain-containing protein At2g16210
SwissprotQ5BPT71e-86Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L4F01e-178D7L4F0_ARALL; Predicted protein
STRINGAl_scaffold_0003_34351e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.18e-83B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]