PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 875173
Common NameARALYDRAFT_674617
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 128aa    MW: 15219.9 Da    PI: 10.8114
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
875173genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind52.81.1e-16171092100
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST.T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   F ++ly++++d++ +++isws++++sfv+ ++++f ++ +++ F   s f+ F+  L+ YgF+++k++++         eF +++F +g+  l++++
        875173  17 FYERLYKLVDDPSSDSIISWSKKSKSFVIRNQKKFIRRKIHSRFPfSSTFEKFISMLKYYGFSEMKRSDGL-------LEFGNENFVRGQPMLMKEM 106
                   899********************************999999999735789*******************87.......*************999998 PP

                   XXX CS
  HSF_DNA-bind  98 krk 100
                   + k
        875173 107 HLK 109
                   766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-2113109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-2114104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.96E-2014107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-61740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-1717107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-66981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MQVLGRSELS DYPLPVFYER LYKLVDDPSS DSIISWSKKS KSFVIRNQKK FIRRKIHSRF  60
PFSSTFEKFI SMLKYYGFSE MKRSDGLLEF GNENFVRGQP MLMKEMHLKA MMKRINKDLT  120
VFKAQRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap875173
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886167.11e-88heat stress transcription factor A-4a
TrEMBLD7LBB53e-87D7LBB5_ARALL; Predicted protein
STRINGAl_scaffold_0003_38145e-88(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.11e-16HSF family protein