PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

875344

Common Name

ARALYDRAFT_674788

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 271aa MW: 30834.1 Da PI: 5.6251

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
875344	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	82.6	5.8e-26	60	156	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWgs 98 lf r +s+eDeiv+Lq +idf+++ + dafye vkksisf+++++qlv+Kir+L++Kf +k k k+++ + sk+ dq +f+ls+kiWgs 875344 60 LFVRKFSKEDEIVILQSIIDFNTRSE----YPSDAFYEDVKKSISFEATTDQLVTKIRNLRRKFDEKILKslekGKTEELIFSSKAFDQRCFDLSRKIWGS 156 6899***************66555....45689*************************99876665547777788889999**********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.2E-22	61	155	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MAPKQPEKFE SPPMASASEE EEEYSGSTEK GSGSSDEGSK KKMKMSEDDV KNDEKPKQNL 60 FVRKFSKEDE IVILQSIIDF NTRSEYPSDA FYEDVKKSIS FEATTDQLVT KIRNLRRKFD 120 EKILKSLEKG KTEELIFSSK AFDQRCFDLS RKIWGSNGFL SSKSKTMLQG QHLGGKIKKD 180 DEDEDPKKHV ISTLSFGQEL VSFISVENPT MLGMDEAKWI ANWDKVKDGP EKRELEFILK 240 KLQAKQVELV MMRIGFINDA AAVLFKQDKA *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	875344

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020886030.1	1e-164	probable transcription factor At4g01260
Swissprot	O04608	3e-85	STKLR_ARATH; Probable transcription factor At4g01260
TrEMBL	D7L3N6	0.0	D7L3N6_ARALL; Predicted protein
STRING	Al_scaffold_0003_3985	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19132	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01260.1	7e-77	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	875344
Entrez Gene	9320270