PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 876627
Common NameARALYDRAFT_676071
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21212.4 Da    PI: 10.4789
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
876627genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.31.1e-241462149
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
            ++i+n+sn qvtfskRr g++KKA+EL +LCdae+a+i+fs+ gk+y +
  876627 14 EKIKNQSNLQVTFSKRRSGLFKKASELRTLCDAEIAIIVFSPGGKVYSF 62
            579********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.53666IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-33665IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-27781IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-23828IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251562IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-232843IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-234364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MVRKNLGRRK IEIEKIKNQS NLQVTFSKRR SGLFKKASEL RTLCDAEIAI IVFSPGGKVY  60
SFRHPNMLND SLTEVMAEKE KEQRKKRSLV QNERENKNAE KWWEKSPKEL KLTQLTCMKH  120
VLEDLKKKVG EITSYVFQTN PNYYVGSSSN VASLATVSGG NISTNHNFFD QNGIPLLFKR  180
CRLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15697194MEF2C
5f28_B1e-15697194MEF2C
5f28_C1e-15697194MEF2C
5f28_D1e-15697194MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap876627
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891569.11e-119LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL28
SwissprotQ9LMM82e-81AGL28_ARATH; Agamous-like MADS-box protein AGL28
TrEMBLD7KTQ51e-133D7KTQ5_ARALL; Predicted protein
STRINGAl_scaffold_0002_12211e-134(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17507710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.11e-83AGAMOUS-like 28
Publications ? help Back to Top
  1. Cheng JZ,Zhou YP,Lv TX,Xie CP,Tian CE
    Research progress on the autonomous flowering time pathway in Arabidopsis.
    Physiol Mol Biol Plants, 2017. 23(3): p. 477-485
    [PMID:28878488]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]