PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

877212

Common Name

ARALYDRAFT_676656

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 236aa MW: 26543.2 Da PI: 8.1514

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
877212	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.6e-11	63	117	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ hn+ Er RR r+ ++ +L +llP s+ ++kK s +i ++ YI +Lq 877212 63 KKQDHNAKERLRRMRLHASYLTLGTLLPDHSSSSKKKWSAPSIIDNVITYIPKLQ 117 6899***********************87889999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-12	57	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.43	62	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.73E-4	62	120	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-10	62	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-7	63	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-6	68	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MSSQPNHQTS ISSLLHDRLH IPPAETIVEK HSSAEKDDTC QSQRKRKEPV LHEVDGSSSG 60 ASKKQDHNAK ERLRRMRLHA SYLTLGTLLP DHSSSSKKKW SAPSIIDNVI TYIPKLQNEV 120 GELTLRKQKL VELERRGPSI RAISVLELGE SGYEAVVQIC LKKENEDEFS NLLHVMELQG 180 LSVLSASTSQ VCREQRVVCY NFHVKMDEKP CEGDDYITVL KNNIISSLRD NTKCK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	877212

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016162	1e-161	AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBank	AC016972	1e-161	AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBank	CP002684	1e-161	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888825.1	1e-174	transcription factor bHLH160 isoform X2
Swissprot	F4I8F9	1e-158	BH160_ARATH; Transcription factor bHLH160
TrEMBL	D7KYS5	1e-172	D7KYS5_ARALL; Predicted protein
STRING	Al_scaffold_0002_1806	1e-173	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-159	bHLH family protein

Link Out ? help Back to Top
Phytozome	877212
Entrez Gene	9324888

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]