PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 878307
Common NameARALYDRAFT_677751
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 248aa    MW: 28423.1 Da    PI: 9.0637
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
878307genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.3e-251762449
            -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
             n+sn qvtfskRr g++KKA+EL++LCdae+a+i+fs++gk+y +
  878307 17 TNESNLQVTFSKRRSGLFKKASELCTLCDAEIAIIVFSPSGKVYSF 62
            699*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-36665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.871666IPR002100Transcription factor, MADS-box
CDDcd002651.17E-34774No hitNo description
SuperFamilySSF554553.92E-28789IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-22828IPR002100Transcription factor, MADS-box
PfamPF003194.2E-261662IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-222843IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-224364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MARKNLGRRK IEIVKMTNES NLQVTFSKRR SGLFKKASEL CTLCDAEIAI IVFSPSGKVY  60
SFGHPNVNVL LDQFSERVLR QNNTNLDESH TKLHIQMLNE SLTEAMAEKE KEQRKKEWLV  120
QNEREIKNVE EWWTNSLKEL NLTQLTSMKH ALEDLKKEVN ERASLFHQSN SNFYVGSSSN  180
AAAPEAVNGG NISINQGFFT QNGMPTHVQT LPFGFNVMNR TPTGYNNCQI QNQEFKQVHP  240
YYGPRYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-17676171MEF2 CHIMERA
6byy_B5e-17676171MEF2 CHIMERA
6byy_C5e-17676171MEF2 CHIMERA
6byy_D5e-17676171MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap878307
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889362.10.0agamous-like MADS-box protein AGL28
SwissprotQ9LMM81e-132AGL28_ARATH; Agamous-like MADS-box protein AGL28
TrEMBLD7KQ650.0D7KQ65_ARALL; Predicted protein
STRINGAl_scaffold_0001_740.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17507710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.11e-135AGAMOUS-like 28
Publications ? help Back to Top
  1. Cheng JZ,Zhou YP,Lv TX,Xie CP,Tian CE
    Research progress on the autonomous flowering time pathway in Arabidopsis.
    Physiol Mol Biol Plants, 2017. 23(3): p. 477-485
    [PMID:28878488]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]