PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 878368
Common NameARALYDRAFT_677812
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 200aa    MW: 22713.1 Da    PI: 6.232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
878368genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM981.4e-3051366127
     NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107
              F+P +eel+++yL++k+++++  + + i+ev+i+++eP dLp  +k e++  wyf s+ +k   + +r++ra ++g Wk tg+++++++ +g+ +glkk Lv
  878368   5 TFNPPEEELINYYLNNKITENDDLVGRQITEVNICHHEPADLPGLAKIESShTWYFISPVEK-FGKLNRTKRASRTGHWKITGNSRTIKDVDGNPIGLKKFLV 106
             7*********************888788***************6444444526777766655.67889*********************************** PP

     NAM 108 fy..........kgrapkgektdWvmheyr 127
             f           + ++ + +kt+W++he++
  878368 107 FQenkrssssssSTTTTQQQKTNWIIHEFH 136
             **666555544435566667*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.9491152IPR003441NAC domain
PfamPF023653.1E-184136IPR003441NAC domain
SuperFamilySSF1019413.14E-336148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MYRCTFNPPE EELINYYLNN KITENDDLVG RQITEVNICH HEPADLPGLA KIESSHTWYF  60
ISPVEKFGKL NRTKRASRTG HWKITGNSRT IKDVDGNPIG LKKFLVFQEN KRSSSSSSST  120
TTTQQQKTNW IIHEFHSFLH HPNKMLTENK NEDYGGDYCN GLDELLPSLE QGESSGLLLG  180
ENGHAYEQDT TENSNVRPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-13615423157NO APICAL MERISTEM PROTEIN
1ut4_B3e-13615423157NO APICAL MERISTEM PROTEIN
1ut7_A3e-13615423157NO APICAL MERISTEM PROTEIN
1ut7_B3e-13615423157NO APICAL MERISTEM PROTEIN
3swm_A3e-13615426160NAC domain-containing protein 19
3swm_B3e-13615426160NAC domain-containing protein 19
3swm_C3e-13615426160NAC domain-containing protein 19
3swm_D3e-13615426160NAC domain-containing protein 19
3swp_A3e-13615426160NAC domain-containing protein 19
3swp_B3e-13615426160NAC domain-containing protein 19
3swp_C3e-13615426160NAC domain-containing protein 19
3swp_D3e-13615426160NAC domain-containing protein 19
4dul_A3e-13615423157NAC domain-containing protein 19
4dul_B3e-13615423157NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap878368
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222871e-135AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026861e-135CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889393.11e-148NAC domain-containing protein 69
TrEMBLD7KB611e-147D7KB61_ARALL; Predicted protein
STRINGAl_scaffold_0001_1351e-148(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.11e-111NAC domain containing protein 49