PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 878930
Common NameARALYDRAFT_678374
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 1494aa    MW: 169011 Da    PI: 5.3663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
878930genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.32e-1123807451368
    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
             l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+ k + + aN+ ++
  878930 380 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYMSVCPFKKAAIIFANHSMM 479
             5789**************************************************************9999...9***************************** PP

    GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
             + +++++++HiiDf+is+G+QWpaL++ L+ Rp+g+p+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+n+ +a+++e++++e+L++++gE ++V
  878930 480 RFTANANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRHNVPFEYNA-IAQKWETIKVEDLKLRQGEYVVV 581
             ************************************************99*****************************.7********************** PP

    GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
             n+ ++  +llde+v ++s+rd+vLkl+++++P+v++ +    ++n++ F++rf eal +ysa+fd+ ++kl+re+e r ++E+e+ grei nvvaceg+er+e
  878930 582 NSLFRFRNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIINVVACEGTERVE 684
             ******************************************************************************************************* PP

    GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
             r et+++W++rl +aGF+++pl+++ +++ kl +++ +++ + v+++s++l++gWk+r + 
  878930 685 RPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNSNWLLQGWKGRIVC 745
             **************************************999****************9886 PP

2GRAS333.24.9e-102111414902373
    GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqa 101 
              ++lL+ cA+ vs+gd+  a+ lL ++++++sp gd+ qRla++f++AL+arl +s+ ++ ++   + ++++++ ++ l+++++f  +sP++++ ++  N++
  878930 1114 RTLLTLCAQSVSAGDKVTADDLLRQIRKQCSPVGDASQRLAHFFANALEARLEGSTGTVIQSYyDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKM 1214
              67999*************************************************888877777466666667799************************** PP

    GRAS  102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 
              I +a++ ++ +HiiDf+i +G+QWp ++q L++ + g  +lRiTg++ p++g   +e+++ tg+rL+++++++gvpfe+n++++k++e++++ee++++p+E
  878930 1215 IFDAAKDASVLHIIDFGILYGFQWPMFIQHLSKSNTGLRKLRITGIEIPQHGlrPTERIQDTGRRLTEYCKRFGVPFEYNAIASKNWETIRMEEFKIQPNE 1315
              ***************************************************9******************************99***************** PP

    GRAS  201 alaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 
              +laVn +l+ ++l d     e+ +rd +Lkl+++++P+v+  +  + + n++ F +rf eal +ysalfd + a+l++e+ eri  E e+ gre++nv+ac
  878930 1316 VLAVNAALRFKNLRDVIPGEEDcPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPERIHFEGEFYGREVMNVIAC 1416
              *************98877777789***************************************************************************** PP

    GRAS  301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 
              eg +r+er et+++W+ r+ +aGFk+ p++ + ++  +  ++k +  + + ++e+s+++++gWk+r L+s S+W
  878930 1417 EGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 1490
              **************************************99999999999************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.236354731IPR005202Transcription factor GRAS
PfamPF035147.1E-110380745IPR005202Transcription factor GRAS
PROSITE profilePS5098559.43910871470IPR005202Transcription factor GRAS
PfamPF035141.7E-9911141490IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 1494 aa     Download sequence    Send to blast
MGSYPDGSMD EFDFNKDFDL PPPNQTLGLA NGFYLDDLDF TSLDPPEAYP SQNYNNNEAA  60
SGDLLSSPSD DADFSDSVLK YISQVLMEED MEEKPCMFHD ALALQAAEKS LYEALGEKYP  120
SSSSGSVDHP ERLATDSPDG SCSGGAFSDY ASTTTTTSSD SHWSVDGLEN RPSWLHTPMP  180
SNFVFQSTSR SNSVTGGGGN TAVYGSGFGG DLVSNMFNDS ELAMQFKRGV EEASKFLPKS  240
SQLFIDVDSY IPKNSGSKEN GSEVFVKMEK KDETEHHHSS APPPNRLTGK KSHWRDEDED  300
FVEERSNKQS AVYVEESELS EMFDKILVCG PGKPVCILNQ KFPTEPAKVE TTQSNGAKIR  360
GKKSTTSNHS NDSKKETADL RTLLVLCAQA VSVDDRRTAN EMLRQIREHS SPLGNGSERL  420
AHYFANSLEA RLAGTGTQIY TALSSKKTSA ADMLKAYQTY MSVCPFKKAA IIFANHSMMR  480
FTANANTIHI IDFGISYGFQ WPALIHRLSL RPGGSPKLRI TGIELPQRGF RPAEGVQETG  540
HRLARYCQRH NVPFEYNAIA QKWETIKVED LKLRQGEYVV VNSLFRFRNL LDETVLVNSP  600
RDAVLKLIRK VNPNVFIPAI LSGNYNAPFF VTRFREALFH YSAVFDMCDS KLAREDEMRL  660
MYEKEFYGRE IINVVACEGT ERVERPETYK QWQARLIRAG FRQLPLEKEL MQNLKLKIEN  720
GYDKNFDVDQ NSNWLLQGWK GRIVCKQCCL EFSSDSDFVA ESFVKFSSSK EEPNSGFYRK  780
KRSFFFWMME SNYSGVVNGL EYYDVSFLPN SIPDLGFGVP SSSDFDLRMD HQPSIWVPDQ  840
DHHFSPPADE IDSENTLLKY VNLLLMEESL AEKQSMFYDS LALRQTEEML QQVISDSQTH  900
SFIPNNSIST TSTSSNSGDY YRSSSNSSNS SVRVETAANS AENEVLLYDN HLGDSGVVSF  960
PGFNMLRGGE QFGQPANEIL VRSMFSDAES VLQFKRGLEE ASKFLPNTDQ WIFNLEPEME  1020
RVVPVKEEKG WSAISRTRKN HHEREEEDDL EEARSSKQFA VDEEDGKLTE MFDKVLLLDG  1080
EYDPLIIEDG ENGSSKAQVK KGRGKKKSRA VDFRTLLTLC AQSVSAGDKV TADDLLRQIR  1140
KQCSPVGDAS QRLAHFFANA LEARLEGSTG TVIQSYYDSI SSKKRTAAQI LKSYSVFLSA  1200
SPFMTLIYFF SNKMIFDAAK DASVLHIIDF GILYGFQWPM FIQHLSKSNT GLRKLRITGI  1260
EIPQHGLRPT ERIQDTGRRL TEYCKRFGVP FEYNAIASKN WETIRMEEFK IQPNEVLAVN  1320
AALRFKNLRD VIPGEEDCPR DGFLKLIRDM NPNVFLSSTV NGSFNAPFFT TRFKEALFHY  1380
SALFDLFGAT LSKENPERIH FEGEFYGREV MNVIACEGVD RVERPETYKQ WQVRMIRAGF  1440
KQKPVEAELV QLFREKMKKW GYHKDFVLDE DSNWFLQGWK GRILFSSSCW VPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-47387149225379Protein SCARECROW
5b3h_D4e-47387149225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap878930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankAK3167930.0AK316793.1 Arabidopsis thaliana AT1G07530 mRNA, complete cds, clone: RAFL05-11-B19.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870887.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLD7KH330.0D7KH33_ARALL; Predicted protein
STRINGAl_scaffold_0001_6970.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]