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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | 878930 | ||||||||
| Common Name | ARALYDRAFT_678374 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family | GRAS | ||||||||
| Protein Properties | Length: 1494aa MW: 169011 Da PI: 5.3663 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 367.3 | 2e-112 | 380 | 745 | 1 | 368 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
l++lL+ cA+avs +d + a+++L +++e++sp g+ +Rla+yf++ L+arla++++++y al++++ts ++ l+a++++ v+P+ k + + aN+ ++
878930 380 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYMSVCPFKKAAIIFANHSMM 479
5789**************************************************************9999...9***************************** PP
GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
+ +++++++HiiDf+is+G+QWpaL++ L+ Rp+g+p+lRiTg++ p+ g +e ++etg+rLa+++++ +vpfe+n+ +a+++e++++e+L++++gE ++V
878930 480 RFTANANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRHNVPFEYNA-IAQKWETIKVEDLKLRQGEYVVV 581
************************************************99*****************************.7********************** PP
GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
n+ ++ +llde+v ++s+rd+vLkl+++++P+v++ + ++n++ F++rf eal +ysa+fd+ ++kl+re+e r ++E+e+ grei nvvaceg+er+e
878930 582 NSLFRFRNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIINVVACEGTERVE 684
******************************************************************************************************* PP
GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
r et+++W++rl +aGF+++pl+++ +++ kl +++ +++ + v+++s++l++gWk+r +
878930 685 RPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNSNWLLQGWKGRIVC 745
**************************************999****************9886 PP
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| 2 | GRAS | 333.2 | 4.9e-102 | 1114 | 1490 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqa 101
++lL+ cA+ vs+gd+ a+ lL ++++++sp gd+ qRla++f++AL+arl +s+ ++ ++ + ++++++ ++ l+++++f +sP++++ ++ N++
878930 1114 RTLLTLCAQSVSAGDKVTADDLLRQIRKQCSPVGDASQRLAHFFANALEARLEGSTGTVIQSYyDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKM 1214
67999*************************************************888877777466666667799************************** PP
GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
I +a++ ++ +HiiDf+i +G+QWp ++q L++ + g +lRiTg++ p++g +e+++ tg+rL+++++++gvpfe+n++++k++e++++ee++++p+E
878930 1215 IFDAAKDASVLHIIDFGILYGFQWPMFIQHLSKSNTGLRKLRITGIEIPQHGlrPTERIQDTGRRLTEYCKRFGVPFEYNAIASKNWETIRMEEFKIQPNE 1315
***************************************************9******************************99***************** PP
GRAS 201 alaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
+laVn +l+ ++l d e+ +rd +Lkl+++++P+v+ + + + n++ F +rf eal +ysalfd + a+l++e+ eri E e+ gre++nv+ac
878930 1316 VLAVNAALRFKNLRDVIPGEEDcPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPERIHFEGEFYGREVMNVIAC 1416
*************98877777789***************************************************************************** PP
GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
eg +r+er et+++W+ r+ +aGFk+ p++ + ++ + ++k + + + ++e+s+++++gWk+r L+s S+W
878930 1417 EGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 1490
**************************************99999999999************************* PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 67.236 | 354 | 731 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 7.1E-110 | 380 | 745 | IPR005202 | Transcription factor GRAS |
| PROSITE profile | PS50985 | 59.439 | 1087 | 1470 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.7E-99 | 1114 | 1490 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0005829 | Cellular Component | cytosol | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1494 aa Download sequence Send to blast |
MGSYPDGSMD EFDFNKDFDL PPPNQTLGLA NGFYLDDLDF TSLDPPEAYP SQNYNNNEAA 60 SGDLLSSPSD DADFSDSVLK YISQVLMEED MEEKPCMFHD ALALQAAEKS LYEALGEKYP 120 SSSSGSVDHP ERLATDSPDG SCSGGAFSDY ASTTTTTSSD SHWSVDGLEN RPSWLHTPMP 180 SNFVFQSTSR SNSVTGGGGN TAVYGSGFGG DLVSNMFNDS ELAMQFKRGV EEASKFLPKS 240 SQLFIDVDSY IPKNSGSKEN GSEVFVKMEK KDETEHHHSS APPPNRLTGK KSHWRDEDED 300 FVEERSNKQS AVYVEESELS EMFDKILVCG PGKPVCILNQ KFPTEPAKVE TTQSNGAKIR 360 GKKSTTSNHS NDSKKETADL RTLLVLCAQA VSVDDRRTAN EMLRQIREHS SPLGNGSERL 420 AHYFANSLEA RLAGTGTQIY TALSSKKTSA ADMLKAYQTY MSVCPFKKAA IIFANHSMMR 480 FTANANTIHI IDFGISYGFQ WPALIHRLSL RPGGSPKLRI TGIELPQRGF RPAEGVQETG 540 HRLARYCQRH NVPFEYNAIA QKWETIKVED LKLRQGEYVV VNSLFRFRNL LDETVLVNSP 600 RDAVLKLIRK VNPNVFIPAI LSGNYNAPFF VTRFREALFH YSAVFDMCDS KLAREDEMRL 660 MYEKEFYGRE IINVVACEGT ERVERPETYK QWQARLIRAG FRQLPLEKEL MQNLKLKIEN 720 GYDKNFDVDQ NSNWLLQGWK GRIVCKQCCL EFSSDSDFVA ESFVKFSSSK EEPNSGFYRK 780 KRSFFFWMME SNYSGVVNGL EYYDVSFLPN SIPDLGFGVP SSSDFDLRMD HQPSIWVPDQ 840 DHHFSPPADE IDSENTLLKY VNLLLMEESL AEKQSMFYDS LALRQTEEML QQVISDSQTH 900 SFIPNNSIST TSTSSNSGDY YRSSSNSSNS SVRVETAANS AENEVLLYDN HLGDSGVVSF 960 PGFNMLRGGE QFGQPANEIL VRSMFSDAES VLQFKRGLEE ASKFLPNTDQ WIFNLEPEME 1020 RVVPVKEEKG WSAISRTRKN HHEREEEDDL EEARSSKQFA VDEEDGKLTE MFDKVLLLDG 1080 EYDPLIIEDG ENGSSKAQVK KGRGKKKSRA VDFRTLLTLC AQSVSAGDKV TADDLLRQIR 1140 KQCSPVGDAS QRLAHFFANA LEARLEGSTG TVIQSYYDSI SSKKRTAAQI LKSYSVFLSA 1200 SPFMTLIYFF SNKMIFDAAK DASVLHIIDF GILYGFQWPM FIQHLSKSNT GLRKLRITGI 1260 EIPQHGLRPT ERIQDTGRRL TEYCKRFGVP FEYNAIASKN WETIRMEEFK IQPNEVLAVN 1320 AALRFKNLRD VIPGEEDCPR DGFLKLIRDM NPNVFLSSTV NGSFNAPFFT TRFKEALFHY 1380 SALFDLFGAT LSKENPERIH FEGEFYGREV MNVIACEGVD RVERPETYKQ WQVRMIRAGF 1440 KQKPVEAELV QLFREKMKKW GYHKDFVLDE DSNWFLQGWK GRILFSSSCW VPS* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3h_A | 4e-47 | 387 | 1492 | 25 | 379 | Protein SCARECROW |
| 5b3h_D | 4e-47 | 387 | 1492 | 25 | 379 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 878930 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC022464 | 0.0 | AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence. | |||
| GenBank | AK316793 | 0.0 | AK316793.1 Arabidopsis thaliana AT1G07530 mRNA, complete cds, clone: RAFL05-11-B19. | |||
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020870887.1 | 0.0 | scarecrow-like protein 14 | ||||
| Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
| TrEMBL | D7KH33 | 0.0 | D7KH33_ARALL; Predicted protein | ||||
| STRING | Al_scaffold_0001_697 | 0.0 | (Arabidopsis lyrata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM13511 | 17 | 28 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G07530.1 | 0.0 | SCARECROW-like 14 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | 878930 |
| Entrez Gene | 9325717 |
| Publications ? help Back to Top | |||
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