PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 878931
Common NameARALYDRAFT_678375
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 629aa    MW: 70040.8 Da    PI: 9.8573
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
878931genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07526575147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
           878931 526 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 575
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864521580IPR017930Myb domain
SMARTSM007177.0E-7525578IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-10526576IPR009057Homeodomain-like
CDDcd116601.56E-16527577No hitNo description
SuperFamilySSF466892.27E-15527608IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS  60
SSSSNNTSGN NEDQCAVKKE PLNGSNLMVE EETTNCDHDN NNAERSFFVS EILPKSHEIQ  120
SFNRSPSPLK EFHFGSSSGI TSDSSDKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL  180
NFEAKLTRNV LAKDENHIGS GFRKPIPQNP SACSDAIDLH GKENDDGENF SACYRTKSFR  240
STLRIGDRRI RKVLASKYCK VPPKLKDTTV PNSDLDLKSD YYSKKHCLKS LRSERNYPIK  300
KRRYFDGYTA SQSEETSKNE GLPGSPRKAS AFLSSIACQK QPAFQSSRDS NNVKLGIKSF  360
RVPELFIEIP ETATVGSLKR TVLEAVTSIL GGGLRIGVLV HGKKVRDDSK MLLQTGLSLD  420
TLSDNLGFCL EPNPPQSTKP LSTEDSDFAR PCNVPHTLTR CFPSPGKHAK PSNSVESDLD  480
SKPSAPNRGK TIYSRALDPV PLHAQALTVL PPRKTKRSEV AQRRIRRPFS VAEVEALVQA  540
VERLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL  600
TAHAYWSQQQ GKHQLLERPQ QLETSLGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-575136154106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMap878931
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892405.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLD7KH340.0D7KH34_ARALL; Predicted protein
STRINGAl_scaffold_0001_6980.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2