PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 880806
Common NameARALYDRAFT_680250
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HB-other
Protein Properties Length: 458aa    MW: 51933.2 Da    PI: 9.4062
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
880806genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.97e-0879122346
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS
  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv 46 
               k++++t+ q++ Lee Fe+++ +  +++  LA+klgL+ +qV v
    880806  79 KKRKLTPVQVRLLEESFEEEKRLEPDRKLCLAEKLGLQPSQVAV 122
               56699*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-768122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-878122IPR009057Homeodomain-like
PfamPF000462.8E-579122IPR001356Homeobox domain
CDDcd000867.74E-579122No hitNo description
Gene3DG3DSA:3.30.70.3302.0E-11277388IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549282.44E-13290378IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010212.339299374IPR000504RNA recognition motif domain
SMARTSM003601.7E-11300370IPR000504RNA recognition motif domain
PfamPF000765.1E-8301351IPR000504RNA recognition motif domain
CDDcd005901.49E-11301369No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MKALNSKRKK KMTDYATLIQ KFNFFWFQNQ SHKFPSSCFP PSSHSAFYGS SSMINTETTS  60
TTMDEEDVCE SYMMREITKK RKLTPVQVRL LEESFEEEKR LEPDRKLCLA EKLGLQPSQV  120
AVCSSTTVTP LKLAMLSSKL TGKFSFYKTK PSRTRYIFRK LTNQFCRDYY VQQIDETFKQ  180
VALLKEKLRM QENLEAQSIE RNRLGEEDSW VKSDNTQYSE EEDLENQYSF PELAVLGFCY  240
DPTLTASNLS TSMSRKRDKP YTYRHTPARI SKRRRPWAPP SFEHDEIIDK PITKPPPPPA  300
LVVTGLPANC SVLELKSRFE IYGSISRIRI DKDGFGSVSY RTAESAEAAI AGSHEPSFGI  360
SIDSKKLEVV WATDPLVKCR EGVTVGEGKD KTLSSSSKLL RPVMPLRKHG RSSRLASAIV  420
NPRSDNTNEI SGGGGVLTPA TIRELKQRDI VTYDDIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254274RKRDKPYTYRHTPARISKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap880806
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4628250.0AF462825.1 Arabidopsis thaliana At1g27050/T7N9_11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7KPL20.0D7KPL2_ARALL; Predicted protein
STRINGAl_scaffold_0001_25730.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.12e-63HD-ZIP family protein