PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 881355
Common NameARALYDRAFT_680799
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 193aa    MW: 22978.2 Da    PI: 8.322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
881355genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM478.1e-1571191128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
             lp+G+rF+ +d +l++++L+++v+++ ++  +vi++ diy+ eP +L++++++          rd+ y+     nr  + g+Wk   + k++++ +++  g k
  881355   7 LPRGVRFSVKDIDLIDDFLRPHVNEEIIQD-NVIESKDIYEKEPGELEHRFNQ------TLLMRDRPYR-AVLDNR--NGGRWKYRET-KKIIR-RDRILGHK 97 
             799***********************9999.99**************855433......3567788775.466777..48****8765.66666.6889**** PP

     NAM 104 ktLvfykgrapkgektdWvmheyrl 128
             +t  f    +++g+ t W  heyrl
  881355  98 ETVDFV---TNQGVTTGWRQHEYRL 119
             *****9...788999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-174134IPR003441NAC domain
PROSITE profilePS5100521.3257135IPR003441NAC domain
PfamPF023652.3E-88119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MERQVPLPRG VRFSVKDIDL IDDFLRPHVN EEIIQDNVIE SKDIYEKEPG ELEHRFNQTL  60
LMRDRPYRAV LDNRNGGRWK YRETKKIIRR DRILGHKETV DFVTNQGVTT GWRQHEYRLA  120
SDDFQTKVLV HLYYDVAFDK TRQLPIPHEQ QRQPRRARQE GIVAPAICEN VVAERVEMDA  180
RPWYMKCFCC LI*
Cis-element ? help Back to Top
SourceLink
PlantRegMap881355
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7KFJ81e-140D7KFJ8_ARALL; Predicted protein
STRINGAl_scaffold_0001_31221e-141(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.12e-10NAC domain containing protein 86