PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 881859
Common NameARALYDRAFT_681303
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 191aa    MW: 22726.8 Da    PI: 7.5544
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
881859genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-181264456
              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              +++++ +q+++Le  F++++++ +e++ ++A+++gL  +qV vWFqNrRa++k
    881859 12 KRRLSVDQVNTLEMNFKEENKLEQERKVRIADETGLHPKQVAVWFQNRRARWK 64
              568999**********************************************9 PP
2HD-ZIP_I/II121.44.6e-3911102293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrls +qv++LE++F+ee+kLe+erKv++a e gl+p+qvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk e ++Le+e++ L+++lke
       881859  11 KKRRLSVDQVNTLEMNFKEENKLEQERKVRIADETGLHPKQVAVWFQNRRARWKTKQLERDYCVLKAHYDSLKLEYNNLEHETQVLTSKLKE 102
                  9***************************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.5E-17970IPR001356Homeobox domain
PROSITE profilePS5007115.6771166IPR001356Homeobox domain
SuperFamilySSF466899.41E-171173IPR009057Homeodomain-like
CDDcd000863.51E-131167No hitNo description
PfamPF000467.4E-161164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-181372IPR009057Homeodomain-like
PROSITE patternPS0002704164IPR017970Homeobox, conserved site
PfamPF021831.6E-1466107IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEEDTFSLGG KKRRLSVDQV NTLEMNFKEE NKLEQERKVR IADETGLHPK QVAVWFQNRR  60
ARWKTKQLER DYCVLKAHYD SLKLEYNNLE HETQVLTSKL KELRAKVREE KREEEHTMSL  120
KEQKRETEEE NDKIFQMVPT SHNGLCSSTT LGSMAEPCQF RNYPEKEIIM VKLKELRNLN  180
YVDYASNLQW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15866RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap881859
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893860.11e-139homeobox-leucine zipper protein HOX4
SwissprotQ6K4982e-37HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH372e-37HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLD7KL471e-138D7KL47_ARALL; Predicted protein
STRINGAl_scaffold_0001_36261e-139(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2529133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-34homeobox protein 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]