PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

882577

Common Name

ARALYDRAFT_682021

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 218aa MW: 24745.8 Da PI: 7.9639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
882577	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00077	88	120	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++l+ + +K + a++L +++ YIk Lq 882577 88 ERITALQQLVSPY-----GKTDTASVLHETMGYIKFLQ 120 6788899999888.....9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.287	70	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-11	74	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-7	85	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MRGTTEEEDG FTSFSDVLML FDDVLSSGDV GEDGFGFTGN ETSQMKKRIS SGDEHDRVCD 60 PKPGKRCKRD QTKSSVGNAK VKKEKVGERI TALQQLVSPY GKTDTASVLH ETMGYIKFLQ 120 DQVQVLSTPY FKHNPLVRRR RHRRSKPDDE SERVEKQWFM SCSTSLDRTR NGVDLWSSAI 180 YLVTSHTKSE PVETVEVKSY KDKLFDAYKY FCLSVDT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	882577

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079674	9e-52	AC079674.4 Arabidopsis thaliana chromosome 1 BAC F10F5 genomic sequence, complete sequence.
GenBank	CP002684	9e-52	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020866746.1	1e-115	LOW QUALITY PROTEIN: transcription factor bHLH113
Swissprot	Q9LT67	1e-34	BH113_ARATH; Transcription factor bHLH113
TrEMBL	D7KF27	1e-159	D7KF27_ARALL; Predicted protein
STRING	Al_scaffold_0001_4344	1e-160	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	7e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	882577
Entrez Gene	9327598

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]