PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 883222
Common NameARALYDRAFT_682666
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 199aa    MW: 23023.4 Da    PI: 9.6902
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
883222genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.16.1e-1656862555
  G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55
              kAtPk++++ m+v++Lt+++vkSHLQkYRl
   883222 56 AKATPKAVMKPMNVESLTIYQVKSHLQKYRL 86
             69****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-75486IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-145687IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-115687IPR006447Myb domain, plants
PfamPF143791.2E-15122154IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
EHLELQFLSD EFELAITDRA ETPRLDEIYQ VNHGQNCVSV TTEPSPGSAV LLSPYAKATP  60
KAVMKPMNVE SLTIYQVKSH LQKYRLAKYM PERKQEKKNG NSEDKKPASN TNEADGRKKG  120
AIQLTEALRM QMEVQKQLHE QLEVQRSLQL RIENMLNTWR RSWKKSENLI KPMHLNLKMT  180
NVKLLENVLD LKTEHPYR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165RRSWKKS
Cis-element ? help Back to Top
SourceLink
PlantRegMap883222
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147458.19e-69PREDICTED: myb family transcription factor PHL6-like
SwissprotQ949U22e-61PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLD7KN561e-144D7KN56_ARALL; Predicted protein (Fragment)
STRINGAl_scaffold_0001_49891e-145(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.29e-64G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]