PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

88436

Common Name

SELMODRAFT_88436

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NF-YB

Protein Properties

Length: 149aa MW: 16734.9 Da PI: 8.4604

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
88436	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	51.8	1.9e-16	8	104	6	92
NF-YB 6 rflPianvsrimkkvlPanak..........iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++lP an+ ri+k l + a+ + k+a + e fi ++++ a+d c++ kr+tin+dd+l al +l f ++vepl++ l+ y+ 88436 8 EELPRANIKRIVKAKLAELARsqlgqerdipVQKEAFQAFAESTRIFIHYLSATANDICRETKRQTINADDVLRALDDLEFGEFVEPLRASLEGYKA 104 689********999876543333333333567888888899999*********************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.3E-33	5	145	IPR009072	Histone-fold
SuperFamily	SSF47113	9.11E-26	9	130	IPR009072	Histone-fold
Pfam	PF00808	1.4E-10	9	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MVVPPESEEL PRANIKRIVK AKLAELARSQ LGQERDIPVQ KEAFQAFAES TRIFIHYLSA 60 TANDICRETK RQTINADDVL RALDDLEFGE FVEPLRASLE GYKAGRKSMP KKSSTSTSKR 120 KTSTTKNKEK AQKAFREGDG EDEEETMQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002981738.1	1e-104	DNA polymerase epsilon subunit 3
TrEMBL	D8R9U5	1e-104	D8R9U5_SELML; Uncharacterized protein
STRING	EFJ30954	1e-104	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP7862	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	3e-32	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	88436
Entrez Gene	9630898

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]