PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

885142

Common Name

ARALYDRAFT_684586

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 94aa MW: 10848.7 Da PI: 8.9205

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
885142	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86.3	4.1e-27	12	94	4	86
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C + +++C+++C +a+yfp + + +++ +++lFG+ n++k+++++pee+++++++s+++e++a+++dP++G +gv++k+ ++ 885142 12 VCITRNKNCPQNCEYAKYFPYKLQCQYESANELFGTPNIIKMMRHAPEEKKQILATSIIMEGNAWTKDPISGGFGVMQKIMWK 94 8******************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.533	8	94	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-21	12	93	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MEPLGNPRPY SVCITRNKNC PQNCEYAKYF PYKLQCQYES ANELFGTPNI IKMMRHAPEE 60 KKQILATSII MEGNAWTKDP ISGGFGVMQK IMWK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	885142

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473866	1e-91	AB473866.1 Arabidopsis thaliana ASL33 mRNA for ASYMMETRIC LEAVES2-like 33 protein, complete cds.
GenBank	DQ056480	1e-91	DQ056480.1 Arabidopsis thaliana LOB domain family protein (At1g36000) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865796.2	4e-66	LOB domain-containing protein 5
Swissprot	Q9C8V8	1e-55	LBD5_ARATH; LOB domain-containing protein 5
TrEMBL	D7MQ68	1e-64	D7MQ68_ARALL; Predicted protein (Fragment)
STRING	Al_scaffold_0008_1406	2e-65	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G36000.1	6e-58	LOB domain-containing protein 5

Link Out ? help Back to Top
Phytozome	885142
Entrez Gene	9300137