PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

885286

Common Name

ARALYDRAFT_684730

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 212aa MW: 23848.2 Da PI: 10.239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
885286	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.2e-07	29	85	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr+ lP + +++K ++ + Av++Ik+ q 885286 29 KLLHRNIERQRRQEMAILFASLRSQLPLKYikaLSSQGKRAMSDHVNGAVNFIKDTQ 85 567999********************766998888888999********9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.03E-10	24	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.47E-5	25	89	No hit	No description
PROSITE profile	PS50888	11.071	27	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-6	29	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-5	29	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MNPSNNPKKT RHQISHMPQE RDETKKEKKL LHRNIERQRR QEMAILFASL RSQLPLKYIK 60 ALSSQGKRAM SDHVNGAVNF IKDTQTRIKD LSSRRDELMR EIGDPTSRTG SGSGSGSSRS 120 EPASVMVQQC VSGFKVVVSS SASSGLEAWP LSRVLEVLHE QGLEVISSLT ARVNERLMYT 180 IQVEVNSFDC FDLAWLQQKL IEELVLSTTR H*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	885286

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493789	0.0	AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020868384.1	1e-129	transcription factor bHLH120
Swissprot	Q9FLI0	1e-128	BH120_ARATH; Transcription factor bHLH120
TrEMBL	D7MRI9	1e-154	D7MRI9_ARALL; Predicted protein
STRING	Al_scaffold_0008_1550	1e-155	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-127	bHLH family protein

Link Out ? help Back to Top
Phytozome	885286
Entrez Gene	9300208

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]