PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 886038
Common NameARALYDRAFT_685482
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 448aa    MW: 50775.9 Da    PI: 5.1377
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
886038genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-11397444247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + WT+eE e l ++vk++G+  Wk I +  +     Rt+ ++k++w+++
           886038 397 KFWTPEEVEALREGVKEYGKS-WKDIKNGNPalfAERTEVDLKDKWRNL 444
                      67*****************88.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.857391447IPR017930Myb domain
SuperFamilySSF466896.5E-13393444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-12393444IPR009057Homeodomain-like
SMARTSM007173.1E-8395447IPR001005SANT/Myb domain
CDDcd116605.70E-16397445No hitNo description
PfamPF002496.3E-9399444IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEVIDQWVAE FILRRQHNPR IAPINLISAL QLGDSSDCIN LKVSSVLRDI SNSLIRGTID  60
EGMLDLLEIL EKLLLQQHSL LMESHKSAYS WTAAECTLRF MWPMFASDGL FTEALERIWT  120
KRIGILKESG SNLVTHDLLK WETDFNKALE EPELYQRIRE SNIRYTAISF LTQLLKEQWA  180
LLGSSSLESV AQRRFLKRKT VNVEGDVVDN RGDQSAVDES TRRLESDTVD VINEQRGGED  240
RNGINRENAN DGERMECPEN DGIDNGNAAD EEHTMGAQEQ EHEPSLDKGD KTVARELKDY  300
LLEIQRHIDP SIRRGEEPNT AINHSVDVTP QPTRVNRTGT RGQDHNEATD NVNEKGSDSQ  360
GTWSSRIRPR LPTPVPLNVS PLKMGGLAKP HVRRPKKFWT PEEVEALREG VKEYGKSWKD  420
IKNGNPALFA ERTEVDLKDK WRNLVGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRFLKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap886038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7357390.0AY735739.1 Arabidopsis thaliana hypothetical protein AT5G58340 mRNA, complete cds.
GenBankAY9248700.0AY924870.1 Arabidopsis thaliana hypothetical protein (At5g58340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864564.10.0uncharacterized protein LOC9302332 isoform X3
RefseqXP_020867087.10.0uncharacterized protein LOC9302332 isoform X3
RefseqXP_020867101.10.0uncharacterized protein LOC9302332 isoform X3
TrEMBLD7MPN10.0D7MPN1_ARALL; Predicted protein
STRINGAl_scaffold_0008_23020.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein