PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 887359
Common NameARALYDRAFT_887359
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 202aa    MW: 23131.9 Da    PI: 5.3465
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
887359genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.61.8e-30121442127
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
             p+ frF+Ptd+ ++++yL+ k  g +  +++++i++v+i +++PwdLp +    k+++++k wyf+s+ d k ++   +  +t+sgyWk+tg++++++ k   
  887359  12 PADFRFRPTDDVIIDYYLRLKHLGIEeGDVNHFITTVEISSYDPWDLPcSqikeKCSNDNKVWYFYSRDDYKFNE---EIWKTSSGYWKETGSNTPIIGKrkr 111
             5669***************99777663677677**************9644555455577899****99998754...4446889*************99666 PP

     NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyr 127
              +g ++g kk+Lvf +  +p+g+k+dWvmh y+
  887359 112 tNGVKIGEKKVLVFQSCANPNGSKSDWVMHVYQ 144
             66777*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-346163IPR003441NAC domain
PROSITE profilePS5100534.95411163IPR003441NAC domain
PfamPF023654.3E-1812144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MESVYSIRID YPADFRFRPT DDVIIDYYLR LKHLGIEEGD VNHFITTVEI SSYDPWDLPC  60
SQIKEKCSND NKVWYFYSRD DYKFNEEIWK TSSGYWKETG SNTPIIGKRK RTNGVKIGEK  120
KVLVFQSCAN PNGSKSDWVM HVYQPTFLPP DQRAYVVCKV EFKSEDKDTP GNSDCVIELN  180
HPPIPCSSQN GASSTTIFEV G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-20914413139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap887359
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7KB621e-148D7KB62_ARALL; Uncharacterized protein
STRINGscaffold_100153.11e-148(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1990645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.11e-43NAC domain containing protein 4