PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

887537

Common Name

ARALYDRAFT_887537

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ERF

Protein Properties

Length: 215aa MW: 23046.9 Da PI: 4.8511

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
887537	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.2	3.2e-16	21	71	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp + kr++lg+f t eAa+a++ a+++++g+ 887537 21 RYRGVRRRP-WGRYAAEIRDPI----KkKRVWLGSFYTGVEAARAYDSAAREFHGA 71 69*****.******72....35***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.6E-10	21	70	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-31	21	84	IPR001471	AP2/ERF domain
CDD	cd00018	1.41E-28	21	78	No hit	No description
SuperFamily	SSF54171	4.38E-20	21	78	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.3E-28	21	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.194	21	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.8E-9	22	33	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.8E-9	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MATKKKKVTK AVAVGKSKEV RYRGVRRRPW GRYAAEIRDP IKKKRVWLGS FYTGVEAARA 60 YDSAAREFHG AKAKTNFRLL GEDGNASVTP VNNALSETAP DGNANFLLVG DDVNASAMLV 120 NNSLSETACD GTLPLDCQNL LSPGVAEAVA GFFLDPSDAT ALKEELDRVC PDQFASIDMG 180 LSIGPQTAVE EPETSSAVDC ELRKEPDLDL NLDP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-16	21	77	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	44	RRRPWGRYAAEIRDPIKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00124	DAP	Transfer from AT1G03800	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	887537

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002892180.1	1e-156	ethylene-responsive transcription factor 10
Swissprot	Q9ZWA2	1e-113	ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBL	D7KD81	1e-155	D7KD81_ARALL; Uncharacterized protein
STRING	scaffold_100331.1	1e-156	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03800.1	4e-96	ERF domain protein 10

Link Out ? help Back to Top
Phytozome	887537
Entrez Gene	9325541

Publications ? help Back to Top
Lehmeyer M, et al. Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter. Plant Biotechnol. J., 2016. 14(1): p. 61-71 [PMID:25819608]