PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 887599
Common NameARALYDRAFT_887599
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 135aa    MW: 14758.1 Da    PI: 8.7728
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
887599genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-202070255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +y+GVr+++ +g+++AeIrd ++ g   r++lg+f+tae+Aa+a+++a+ +++g
  887599 20 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 70
            7********.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.07E-182079No hitNo description
Gene3DG3DSA:3.30.730.102.6E-322080IPR001471AP2/ERF domain
PfamPF008472.2E-142070IPR001471AP2/ERF domain
SMARTSM003808.0E-352084IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-242080IPR016177DNA-binding domain
PROSITE profilePS5103223.9472078IPR001471AP2/ERF domain
PRINTSPR003678.8E-122132IPR001471AP2/ERF domain
PRINTSPR003678.8E-124460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDQGGRSGGG GGGGGAEQMK YRGVRRRPWG KYAAEIRDSR KHGERVWLGT FDTAEDAARA  60
YDRAAYSMRG KAAILNFPHE YSMGTGSSST AASSSSSSRQ VFEFEYLDDS VLDELLEYGE  120
NYNKTHNINT GKRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-5211111114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311GGRSGGGGG
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap887599
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3519000.0EU351900.1 Arabidopsis lyrata At1g04370-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889501.12e-94ethylene-responsive transcription factor 14
SwissprotP938229e-63ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBLD7KDD74e-93D7KDD7_ARALL; Uncharacterized protein
STRINGscaffold_100393.17e-94(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.19e-60Ethylene-responsive element binding factor 14