PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 888314
Common NameARALYDRAFT_888314
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 147aa    MW: 17235.8 Da    PI: 8.6538
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
888314genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.4e-1225115282
             EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
      B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
              k+l+ sd   +++l+lpk+ +e++           +     +++++l+d ++    s++v+l  + + g+y+l+kGW+   +++ Lk+gD + +
  888314  25 TKKLSDSDLCYRAQLYLPKQEMEQFilpemendlvrK--LGAGVEIKLRDIDNvsdDSYTVRL--KVRNGQYYLEKGWRLIKNDKCLKTGDHIGL 115
             589999*****************99998877766432..237899***99988888*******..999999********************8755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1318119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-1519121IPR015300DNA-binding pseudobarrel domain
CDDcd100174.12E-1622127No hitNo description
SMARTSM010191.2E-824130IPR003340B3 DNA binding domain
PfamPF023621.2E-826116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MAKNNDINLD LSLSQYVEDD PWVLTKKLSD SDLCYRAQLY LPKQEMEQFI LPEMENDLVR  60
KLGAGVEIKL RDIDNVSDDS YTVRLKVRNG QYYLEKGWRL IKNDKCLKTG DHIGLFWDKL  120
TGEFKFKHSE SQSIVKRVLI RHRRTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMap888314
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934451e-127AB493445.1 Arabidopsis thaliana At1g10455 gene for hypothetical protein, partial cds, clone: RAAt1g10455.
GenBankAC0070671e-127AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankAF1705501e-127AF170550.1 Arabidopsis thaliana germin-like protein 7 (GLP7) gene, complete cds.
GenBankCP0026841e-127CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889808.11e-104B3 domain-containing protein At1g10455
SwissprotQ9XIK59e-74Y1045_ARATH; B3 domain-containing protein At1g10455
TrEMBLD7KKR31e-103D7KKR3_ARALL; Uncharacterized protein
STRINGscaffold_101108.11e-104(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1992934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.11e-08B3 family protein