PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 888596
Common NameARALYDRAFT_888596
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 189aa    MW: 20364.6 Da    PI: 4.6194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
888596genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-161562355
     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa+a++ a+++l+g
  888596 15 YRGIR-CR-SGKWVSEIREPKK---TTRIWLGTYPTAEMAAAAYDVAALALKG 62
            9***9.55.6*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-91362IPR001471AP2/ERF domain
SMARTSM003805.4E-281476IPR001471AP2/ERF domain
PROSITE profilePS5103220.2711470IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-271471IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-181471IPR016177DNA-binding domain
CDDcd000182.00E-161570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGSSSLGSRR KDPAYRGIRC RSGKWVSEIR EPKKTTRIWL GTYPTAEMAA AAYDVAALAL  60
KGRGAVLNFP GSAQSYPVPE SKSAADIRTA AAAAAAMKGC EEGEEEKEAT EKNSSSSQFR  120
ARENHVNNEV ASSSWCGTEF MDEEEVLNMP NLLANMAEGM MVAPPSWMGS RPSDDSPENS  180
NDEDLWGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1315701572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap888596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0254170.0AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence.
GenBankAY5608930.0AY560893.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g12630) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ1457760.0DQ145776.1 Arabidopsis thaliana Ap2/EREBP transcription factor (At1g12630) mRNA, complete cds.
GenBankDQ4462450.0DQ446245.1 Arabidopsis thaliana clone pENTR221-At1g12630 AP2 domain-containing protein (At1g12630) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889951.21e-136ethylene-responsive transcription factor ERF027
SwissprotQ38Q392e-84ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLD7KP961e-135D7KP96_ARALL; Uncharacterized protein
STRINGscaffold_101390.11e-135(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.18e-64ERF family protein