PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 888726
Common NameARALYDRAFT_888726
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 197aa    MW: 22934.1 Da    PI: 5.6804
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
888726genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.53e-1386136555
             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
             +++rr+++NRe+ArrsR RK+  ++eL   vk L + N  L+++l++ ++ 
  888726  86 RKQRRMISNRESARRSRMRKQRHLDELWSQVKRLRTDNYCLIDKLNRVSES 136
             79*******************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-1282146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.24384136IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-1086159No hitNo description
SuperFamilySSF579593.62E-1286135No hitNo description
PfamPF001704.2E-1186138IPR004827Basic-leucine zipper domain
CDDcd147025.98E-1887137No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
SuperFamilySSF476613.34E-5108189IPR010989t-SNARE
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016192Biological Processvesicle-mediated transport
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNTIPAELTG YFHYLSPDKY NNQNPIMESE YFNMPSSPTS SSTFYHLNGL INNNKYSSSF  60
NGQDLMTSNN STSDDDHQQS MVIDERKQRR MISNRESARR SRMRKQRHLD ELWSQVKRLR  120
TDNYCLIDKL NRVSESHELA LKENAKLKEE TSDLRQLISE IKSNNEDDNS FLRELEDSIS  180
NSRSDSNQSG RDFELC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap888726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0271340.0AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBankAF3324300.0AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF21F230.0AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892761.11e-142basic leucine zipper 43
TrEMBLD7KQH31e-141D7KQH3_ARALL; BZIP transcription factor family protein
STRINGscaffold_101520.11e-141(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.11e-116basic leucine-zipper 58