PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 890808
Common NameARALYDRAFT_890808
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 386aa    MW: 40639.8 Da    PI: 7.9647
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
890808genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-0793116125
              --S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
              +kt+lC+ f++ GtC+y  +C+FaH
   890808  93 FKTKLCCKFRA-GTCPYITNCNFAH 116
              69*********.************* PP
2zf-CCCH42.61e-13262287126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +kt++C+ +  tG+C++G++C+FaHg
   890808 262 WKTRICNKWEITGYCPFGAKCHFAHG 287
              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-790123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-1390125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3892119IPR000571Zinc finger, CCCH-type
SMARTSM003560.004492118IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-593116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244173201IPR000571Zinc finger, CCCH-type
SMARTSM003560.47173200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-8174200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-17257291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-9258292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178261289IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9261288IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11262287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSHHHRRDSG GDVVHVIPTN NPPPDNWFPN LGDSAVWATE DDYNRAWAVN PDNTSGDNNG  60
PPNKKTRGSP SSSSATTTSA ASNRTKAIGK MFFKTKLCCK FRAGTCPYIT NCNFAHTVEE  120
LRRPPPNWQE IVAAHEEERS GGMGTPTVAV VELPREEFQI PSLVSSTAES GRSFKGRHCK  180
KFYTEEGCPY GESCTFLHDE ASRNRESVAI SLGPGGYGSG GGGGGSGGGS GGGGGGSSSN  240
VVVLGGGGGS GSGINILKPS NWKTRICNKW EITGYCPFGA KCHFAHGAAE LHRFGGGLVE  300
EEGKDGGSPN PDTKQTVQNP KGHADTTTLL SPGVPHHADA GYHSGVALQR ASSAVTQKPG  360
VRTHQKWKGP AKISRIYGDW IDDIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218229SGGGGGGSGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMap890808
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180130.0AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890985.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLD7KHJ60.0D7KHJ6_ARALL; Zinc finger (CCCH-type) family protein
STRINGscaffold_103602.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein