PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

890969

Common Name

ARALYDRAFT_890969

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 194aa MW: 21549.4 Da PI: 5.087

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
890969	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.2	1.7e-30	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+l+++Ca++C+ ap+fp+++ +f+ v ++FGa nv k+l +l +e+r++a+++l yeAear rdP++G++g+il+ ++ l++ ++e++++k+e 890969 5 RCAVCKILNETCAQGCISAPHFPSND-TSFEDVSRVFGAMNVRKILVDLnTPEQRQIAANCLRYEAEARRRDPISGCHGMILHHKSILNNIEQEIESTKNE 104 6********************998.79***************967888****************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.414	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-29	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MASNRCAVCK ILNETCAQGC ISAPHFPSND TSFEDVSRVF GAMNVRKILV DLNTPEQRQI 60 AANCLRYEAE ARRRDPISGC HGMILHHKSI LNNIEQEIES TKNELEPYVG SDRMPKFFDL 120 PMPEDFLTTS ASLDFFVEKI KSLNAVQKNQ LMQLPTADAQ MIMGKIFWNG EDHKKDEDGH 180 GPEADGASTS ACQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-21	2	108	8	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-21	2	108	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	890969

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002891065.1	1e-145	LOB domain-containing protein 32
Swissprot	O49651	7e-89	LBD32_ARATH; LOB domain-containing protein 32
TrEMBL	D7KJB0	1e-144	D7KJB0_ARALL; Uncharacterized protein
STRING	scaffold_103763.1	1e-144	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22700.1	3e-91	LOB domain-containing protein 32

Link Out ? help Back to Top
Phytozome	890969
Entrez Gene	9327127