PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 890971
Common NameARALYDRAFT_890971
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 193aa    MW: 21138 Da    PI: 5.6208
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
890971genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.8e-2961042100
  DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
             Ca+Ck+l+++Ca++C+ apyfp+++  +f+ v k+FGa n+ k+l++l  +e+r++a+++l y Aear rdP+++++g+il+ ++ l++ +++++++k+e
  890971   6 CAVCKILKETCAQGCISAPYFPSND-TSFEDVSKVFGAVNIRKILADLnTPEQRQIAANCLRYAAEARRRDPISSCHGIILHHKSILNNIEQDIESTKNE 104
             **********************998.79********************67788*****************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4514105IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-276102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTSSHCAVCK ILKETCAQGC ISAPYFPSND TSFEDVSKVF GAVNIRKILA DLNTPEQRQI  60
AANCLRYAAE ARRRDPISSC HGIILHHKSI LNNIEQDIES TKNELESYVG PDRVPKFFDL  120
PMPEDFLTTS ASLDFFVEKI KSLNAVQKNQ LMQLPAADAQ MIMGKIFWKG EDQKMDDGHG  180
PGADGASTSA GQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-20610812114LOB family transfactor Ramosa2.1
5ly0_B2e-20610812114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap890971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893786.11e-144LOB domain-containing protein 32
SwissprotO496514e-89LBD32_ARATH; LOB domain-containing protein 32
TrEMBLD7KJB31e-142D7KJB3_ARALL; Uncharacterized protein
STRINGscaffold_103765.11e-143(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.12e-91LOB domain-containing protein 32