PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 8911
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YB
Protein Properties Length: 132aa    MW: 14848.7 Da    PI: 4.7355
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
8911genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB55.41.5e-17396494
  NF-YB  4 qdrflPianvsrimk...kvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
           ++  lP a + ++++   +++ an kis++++e+v ec  ef+  v++ea++ + re + ti+++ +l al  lGfe y ++ ++   + +e e
   8911  3 DELQLPRATLHKMINdalRAIDANQKISNECREMVCECGDEFVNAVSAEANEASTREGKSTITAEHVLRALRALGFESYEAECEIARDEAKEEE 96
           56679999999999833355689********************************************************888776655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.4E-292131IPR009072Histone-fold
SuperFamilySSF471132.42E-283131IPR009072Histone-fold
PfamPF008083.2E-11673IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
SDDELQLPRA TLHKMINDAL RAIDANQKIS NECREMVCEC GDEFVNAVSA EANEASTREG  60
KSTITAEHVL RALRALGFES YEAECEIARD EAKEEENEKR EAKKKRKRID MSAEDAMALQ  120
NKLFAEARAK MA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-23112810133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005840.0CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417624.17e-90predicted protein, partial
TrEMBLA4RWR32e-88A4RWR3_OSTLU; Uncharacterized protein (Fragment)
STRINGABO959173e-89(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP24221515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.43e-20nuclear factor Y, subunit B13